README
perform needleman wunsch alignment
wunsch [OPTIONS...] [INPUTA] [INPUTB]
EXAMPLE wunsch GATTACA GCATGCU
InputA GAT-TACA
InputB G-CATGCU
aln : . :.:.
score -1
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EXAMPLE wunsch GATTACA GCATGCU --min
InputA InputB -1
INPUT can be a string or a filename. If any file contains
multiple fasta seqeuences, each possible sequence
combination between the two lists will be calculated.
OPTIONS
--gap set gap penalty (default -1)
--miss set missmatch penalty (default -1)
--match set match penalty (default 1)
--help -h show this help
--min -m show minimal output: headingA headingB score
--verbose -v show verbose output
AUTHOR Waldemar Reusch <waldemar.reusch@googlemail.com>
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